Network Modeling and Analysis

Network models capture the relationship between different components, proving useful in a range of applications including systems biology and molecular dynamics simulation analysis.

Recently updated projects

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News

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New file added: Emma-1.4.zip

EMMA - Markov Model Algorithms Jun 11, 2013
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MSMBuilder 1.0 released

MSMBuilder Dec 14, 2010
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Greg Bowman awarded the 2010 Kuhn Paradigm Shift Award

MSMBuilder Mar 29, 2010

Publications

Predicting walking response to ankle exoskeletons using data-driven models

Catherine A. Rivet , Ariel S. Kniss-James , Margaret A. Gran, Anish Potnis, Abby Hill, Hang Lu, Melissa L. Kemp. "Calcium Dynamics of Ex Vivo Long-Term Cultured CD8+ T Cells Are Regulated by Changes in Redox Metabolism". PLoS One: e0159248, 2016.

HTMD: High-Throughput Molecular Dynamics for Molecular Discovery

Discussion

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Data-driven prediction of gait with ankle exoskeletons Public Forum

Data-driven prediction of gait with ankle exoskeletons Dec 12, 2020
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Usings STAMS on RNA-seq data genes with log fold change values and p values

STAMS: STRING-Assisted Module Search for Genome Wide Association Studies Jul 10, 2019
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Issue with msmbuilder Cluster.py

MSMBuilder Feb 11, 2019

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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