Supplemental Files for Mallory Dissertation
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Chapter4_Additional_Interactions

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Gene-Disease extractions
Aug 8, 2018
Author: Emily Mallory
Gene-Disease extractions with PubMed Central document id and gene and drug character offsets in the source sentence. Entities extracted using dictionary approach.

Gene-Drug extractions
Aug 8, 2018
Author: Emily Mallory
Gene-Drug extractions with PubMed Central document id and gene and drug character offsets in the source sentence. Entities extracted using dictionary approach.

Evaluation

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Chapter6_Microbiome_Literature_Rxn

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Ranked literature rxns for drug queries
Aug 8, 2018
Author: Emily Mallory
File of top ten literature-based chemical reactions for the drug-metabolite queries.

Chapter7_Semantic_Motifs

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Chapter 7 README
Aug 8, 2018
Author: Emily Mallory
README file for Chapter 7 directory. Includes directory and file descriptions.

Semantic Motifs for Risperidone GNBR Query
Aug 8, 2018
Author: Emily Mallory
Semantic motif results from querying the Global Network of Biomedical Relationships (GNBR) with risperidone

auc

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PD_IN_LINE_ProteinSmallMoleculeProtein_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:46-07:00

PD_IN_LINE_SmallMoleculeProteinSmallMolecule_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:46-07:00

PD_LINE_ProteinSmallMoleculeProtein_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:46-07:00

PD_LINE_SmallMoleculeProteinSmallMolecule_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:46-07:00

PD_OUT_LINE_ProteinSmallMoleculeProtein_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:46-07:00

PD_OUT_LINE_SmallMoleculeProteinSmallMolecule_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:47-07:00

PK_IN_LINE_ProteinSmallMoleculeProtein_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:47-07:00

PK_IN_LINE_SmallMoleculeProteinSmallMolecule_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:47-07:00

PK_LINE_ProteinSmallMoleculeProtein_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:47-07:00

PK_LINE_SmallMoleculeProteinSmallMolecule_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:47-07:00

PK_OUT_LINE_ProteinSmallMoleculeProtein_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:47-07:00

PK_OUT_LINE_SmallMoleculeProteinSmallMolecule_within_auc_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:34:47-07:00

supplemental_semantic_motif_results

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edge_motifs_3_PD_within_IN_LINE_lines_all_comparison.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:35-07:00

edge_motifs_3_PD_within_LINE_lines_all_comparison.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:35-07:00

edge_motifs_3_PD_within_OUT_LINE_lines_all_comparison.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:35-07:00

edge_motifs_3_PD_within_vec_positives_lines_all_collapsed.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:35-07:00

edge_motifs_3_PD_within_vec_positives_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:35-07:00

edge_motifs_3_PK_within_IN_LINE_lines_all_comparison.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:36-07:00

edge_motifs_3_PK_within_LINE_lines_all_comparison.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:36-07:00

edge_motifs_3_PK_within_OUT_LINE_lines_all_comparison.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:36-07:00

edge_motifs_3_PK_within_vec_positives_lines_all_collapsed.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:36-07:00

edge_motifs_3_PK_within_vec_positives_lines_all.txt
Aug 8, 2018
Author: Emily Mallory
Uploaded by ZIP:2018-08-02T21:38:36-07:00

Uncategorized Submissions

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README dissertation directory
Aug 8, 2018
Author: Emily Mallory
README file for dissertation directory

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Aug 6, 2018

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