C2A (Coarse to Atomic)
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ADIT results

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1GID ADIT results
Aug 8, 2009
Author: Magdalena Jonikas
Results from RCSB ADIT evaluation for 1GID reconstructed models

1KXK ADIT results
Aug 8, 2009
Author: Magdalena Jonikas
Results from RCSB ADIT evaluation for 1KXK reconstructed models

1Y0Q ADIT results
Aug 8, 2009
Author: Magdalena Jonikas
Results from RCSB ADIT evaluation for 1Y0Q reconstructed models

1ZZN ADIT results
Aug 8, 2009
Author: Magdalena Jonikas
Results from RCSB ADIT evaluation for 1ZZN reconstructed models

3CUL ADIT results
Aug 8, 2009
Author: Magdalena Jonikas
Results from RCSB ADIT evaluation for 3CUL reconstructed models

6TNA ADIT results
Aug 8, 2009
Author: Magdalena Jonikas
Results from RCSB ADIT evaluation for 6TNA reconstructed models

NAST tRNA ADIT results
Aug 8, 2009
Author: Magdalena Jonikas
ADIT results for full atomic NAST models of tRNA (compressed text files)

Full Atomic Reconstructions (Results)

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1GID reconstruction results
Aug 8, 2009
Author: Magdalena Jonikas
1GID reconstructions results (also input for ADIT evaluation)

1KXK reconstruction results
Aug 8, 2009
Author: Magdalena Jonikas
1KXK reconstructions results (also input for ADIT evaluation)

1Y0Q reconstruction results
Aug 8, 2009
Author: Magdalena Jonikas
1Y0Q reconstructions results (also input for ADIT evaluation)

1ZZN reconstruction results
Aug 8, 2009
Author: Magdalena Jonikas
1ZZN reconstructions results (also input for ADIT evaluation)

3CUL reconstruction results
Aug 8, 2009
Author: Magdalena Jonikas
3CUL reconstructions results (also input for ADIT evaluation)

6TNA reconstruction results
Aug 8, 2009
Author: Magdalena Jonikas
6TNA reconstructions results (also input for ADIT evaluation)

NAST tRNA results
Aug 8, 2009
Author: Magdalena Jonikas
Atomic reconstruction of NAST tRNA models groups A, B and C (compressed)

Supporting documents

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Minimization Energies
Aug 8, 2009
Author: Magdalena Jonikas
Minimization energies and forces

Minimizing with GROMACS
Aug 8, 2009
Author: Magdalena Jonikas
Directions, tips and tricks for minimizing full atomic RNA structures with GROMACS

NAST/C2A Tutorial
Aug 8, 2009
Author: Magdalena Jonikas
Tutorial including instructions for C2A (in particular, fragment definition file format)

tRNA Base Pair Evaluation
Aug 8, 2009
Author: Magdalena Jonikas
RMSD evaluation of helical base pairs and tertiary contacts

Uncategorized Submissions

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Last updated
Aug 13, 2010
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Magdalena Jonikas

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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