This .zip file contains the core algorithm for the ddTASEP, the functions to measure simulation properties from the ddTASEP, and our data sets and visualization code for our submitted manuscript to PLOS Computational Biology.

This file contains an expanded ddTASEP algorithm that now allows for parameter variability in the local nucleosome rate constants and in the local advance rate to simulate variable static and dynamic defects. This package further contains all of the data for the revised version of our manuscript under review at the PLOS Journal of Computational Biology