SimTK: CoBi Core Models, Data, Training Materials: Downloads

CoBi Core Models, Data, Training Materials

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Biomechanics Workshop

This package contains workshop materials for multiscale biomechanics; including presentations and hands-on tutorials utilizing finite element analysis. Required software include PreView v1.12, FEBio v1.6 & PostView v1.4. The information is geared towards a general audience interested in biomechanical principals at multiple spatial scales. The workshop was originally delivered at Pan American Advanced Studies Institute on Cells to Ecosystems: Frontiers in Collaborative Quantitative Physics-Based Multiscale Modeling of Biological Processes, July 8-26, 2013, Porto Alegre, Brazil.

version 1.0.0

Jul 17, 2013

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presentation-3.pdf

Jul 17, 2013

5 MB

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Multiscale Biomechanics - Part 3: Beyond Mechanics

tutorial-1.zip

Jul 17, 2013

3 MB

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Tutorial 1: Finite Element Analysis of Sliding Indentation of Tissue Constructs

tutorial-2.zip

Jul 17, 2013

71 MB

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Tutorial 2: Finite Element Analysis of the Role of Tissue Mechanics on Cell Mechanics

tutorial-3.zip

Jul 17, 2013

44 MB

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Tutorial 3: Finite Element Analysis of the Role of Pericellular Matrix Properties on Cell Mechanics

supplement.pdf

Jul 17, 2013

19 MB

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Multiscale Biomechanics - Supplementary Material

presentation-1.pdf

Jul 17, 2013

20 MB

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Multiscale Biomechanics - Part 1: Concepts & Tools

presentation-2.pdf

Jul 17, 2013

9 MB

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Multiscale Biomechanics - Part 2: Coupling Mechanics

PLEASE CITE THESE PAPERS

Erdemir, A., Multiscale Biomechanics, Pan American Advanced Studies Institute - From Cells to Ecosystems: Frontiers in Collaborative Quantitative Physics-Based Multiscale Modeling of Biological Processes, July 8-26, 2013, Porto Alegre, Brazil. (2013)

Concepts in Joint Biomechanics

This package contains a presentation on fundamental mechanical concepts of joint mechanics at body, joint, tissue, and cell scales. The target audience was medical residents and fellows.

version 1.0.0

Oct 19, 2012

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joint_biomechanics.pdf

Oct 19, 2012

7 MB

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PLEASE CITE THESE PAPERS

Erdemir, A., Basic concepts in joint biomechanics, Orthopaedic Academic Day, October 16, 2012, Department of Orthopaedic Surgery, Cleveland Clinic, Cleveland, OH. (2012)

FEA Workshop - Foot & Footwear

This package contains materials for a finite element analysis workshop. The information is geared towards hands-on experience on using the technique for foot biomechanics and footwear design.

version 1.1.0

Oct 07, 2010

Package content includes i) barefoot.cae: two-dimensionalfinite element representation of the barefoot heel pad, ii) barefoot.zip: solution of the barefoot model with default model parameters and loading and boundary conditions, iii) footwear.cae: two-dimensional finite element representation of the heel pad and footwear, iv) footwear.zip: solution of the footwear model with default model parameters and loading and boundary conditions, v) footwear_model_details.pdf: more detailed description of footwear model components, vi) footwear_simulation_tutorial.pdf: step-by-step instructions for changing insole material properties and heel pad compression force and conducting simulations, and vii) workshop_presentation.pdf: slides from workshop presentation This tutorial was developed using Abaqus 6-9-1 (Simulia, Providence, RI) and tested with Abaqus 6-9-2 Student Edition (Simulia, Providence, RI).

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FEA-foot_n_footwear.zip

Oct 14, 2010

14 MB

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ZIP file including all the material required for the workshop

PLEASE CITE THESE PAPERS

Erdemir, A., Workshop #4: finite element analysis in foot biomechanics and footwear design, i-FAB 2010, 2nd Congress of the International Foot and Ankle Biomechanics Community, University of Washington, September 16-18, 2010. (2010)

Motion & Deformation Mechanics

This package contains a presentation on multiscale mechanics of motion and deformation of the musculoskeletal system. The target audience was graduate engineering students.

version 1.0.0

Feb 05, 2013

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multiscale-motion_n_deformation.pdf

Feb 05, 2013

28 MB

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PLEASE CITE THESE PAPERS

Erdemir, A., Multiscale biomechanics of movements & deformations, November 29, 2012, Lecture in Introduction to Musculoskeletal Biomechanics (EMAE 415), Department of Mechanical and Aerospace Engineering, Case Western Reserve University, Cleveland, OH. (2012)

Multiscale Biomechanics

This package contains presentation materials for data-driven multiscale simulations in musculoskeletal biomechanics. The information is geared towards providing an overview of approaches of the date for solving the load sharing problem between joints, tissues, and cells.

version 1.0.0

Oct 20, 2011

Package content includes i) abstract.pdf: a short summary of presentation material, ii) bio.pdf: a short biography and contact information of the presenter, iii) presentation.pdf: slides, iv) presentation_summary.pdf: a detailed summary of the presentation

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multiscale_musculoskeletal_biomechanics.zip

Oct 20, 2011

25 MB

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PLEASE CITE THESE PAPERS

Erdemir, A., Data-driven multiscale analysis in musculoskeletal biomechanics, RPI-NSF Workshop on Multiscale Modeling of Complex Data, September 12-14, 2011, Troy, NY. (2011)

Verification and Validation

This presentation is provided as a perspective and reference on the process of verification and validation in computational models, especially as it relates to orthopaedic biomechanics. The talk was originally delivered at the “21st Annual Symposium on Computational Methods in Orthopaedic Biomechanics”, the “Pre-ORS”, meeting in San Antonio, TX on January 25th, 2013.

Version 1.0.0

Feb 20, 2013

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VandV_presentation.pdf

Feb 20, 2013

4 MB

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SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Version 4.2.2. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 6.0.5.

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