Ribosomal translocation with EF-G
Share 
Follow 
 
AboutDownloadsDocumentsForumsSource CodeIssues
    Downloads
Follow
Full_trajectory
Full morph trajectory of translocation with EF-G. Steps 1 to 6.
trajectory v2
Jun 12, 2015

With and without full complement of ribosomal proteins  View License

Download Package

Download Links

full_morph_translocation_proteins_gateblocked.tgz
Nov 22, 2015
31 MB
Any
Data/images/video
Translocation with proteins, gate blocked

full_morph_translocation_proteins_gatepass.tgz
Nov 22, 2015
31 MB
Any
Data/images/video
Translocation with proteins

full_morph_translocation.pdb
Nov 22, 2015
839 MB
Any
Data/images/video
Full trajectory with rRNA + EF-G

translocation_gate_passing.m4v
Jun 05, 2017
5 MB
Any
Data/images/video
Movie showing full translocation trajectory, including gate-passing. Includes EF-G. Kindly cite our MMB-GUI paper if you show this.

PLEASE CITE THESE PAPERS

Tek, A., Korostelev, A.A. and Flores, S.C. (2015) MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory. Nucleic Acids Res., 10.1093/nar/gkv1457. (2015) View

Previous Releases


trajectory v1

Jul 24, 2014

First version of the trajectory.  View License

Download Package

Download Links

translocation_gate_passing.m4v
Nov 09, 2014
5 MB
Any
Data/images/video

full_translocation.m4v
Nov 09, 2014
5 MB
Any
Data/images/video

full_morph_translocation.tgz
Feb 08, 2015
202 MB
Any
Data/images/video


Follow
Inputs for full trajectory
Input files used to generate the full morph trajectory of EF-G induced ribosome translocation
Input files
Feb 22, 2015

See notes for instructions.Notes  View License

Download Package

Download Links

step3to4_remake.zip
Feb 22, 2015
7 MB
Any
Data/images/video

step4to5_remake.zip
Feb 22, 2015
4 MB
Any
Data/images/video

step1to2.zip
Feb 22, 2015
4 MB
Any
Data/images/video

step2to3_remake.zip
Feb 22, 2015
5 MB
Any
Data/images/video

step5to6_remake.zip
Feb 22, 2015
6 MB
Any
Data/images/video


Follow
Morphs
Morph benchmark
version 1
Jan 14, 2015

Supporting files  View License

Download Package

Download Links

MorphCalpump.zip
Jan 14, 2015
272 KB
Any
Data/images/video

MorphMyosin.zip
Jan 14, 2015
265 KB
Any
Data/images/video

MorphNucleotidase.zip
Jan 14, 2015
152 KB
Any
Data/images/video

MorphRBP.zip
Jan 14, 2015
80 KB
Any
Data/images/video

MorphRNaseIII.zip
Jan 14, 2015
262 KB
Any
Data/images/video


175

downloads

1

forum posts

2

followers

Last updated
Jun 5, 2017
Image not available
Alex Tek
Image not available
Samuel Flores

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Our Pledge and Your Responsibility

  About   Join
Version 4.2.2. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 6.0.5.
Feedback