A java-based visualization application for Markov State Models for folding simulations. The programs is designed as a gui interface for viewing and interacting with MSMs constructed by MSMBuilder.

SOURCE CODE NOTICE:
for up-to-date source code access please visit:
http://github.com/brycecr/msmexplorer

Similarly, Up-to-date distributions can be downloaded from
https://github.com/brycecr/msmexplorer/downloads
but periodic major releases (considered "stable") will still be uploaded to simtk.

In the Documents section of this site, you'll find an illustrated Reference and Tutorial PDF and a short tutorial video.