Use FEATURE predictions to compare structure models to reference structures. The similarity in the predicted probabilities of the SeqFEATURE models for the structure models versus the target structures are used to assess the quality of the structure models. A full description of the methodology is described in the following reference.

Toth, Joshua M., et al. "ResiRole: residue-level functional site predictions to gauge the accuracies of protein structure prediction techniques." Bioinformatics 37.3 (2021): 351-359.

The URL for the ResiRole tool is available at the URL http://protein.som.geisinger.edu/ResiRole/